Overview of IMP3 output

While running, IMP3 will write the intermediary output and final results into the user-defined output directory (outputdir, see configuration). Before finishing, IMP3 will compress some of the intermediary steps to reduce space. Finally, the IMP3 workflow will generate summaries and visualizations (see configuration if defined).

An overview of the all outputs, files and their directory structure is given below:

The user can run reporting to get more information on the run, together with the visualizations in HTML format. All outputs are explained in more detail in the next sections.